GoekeLab / xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
Why this job: works in the areas we cover, but does not say which job it does
What it does
The current release is xPore v2.2, which adds support for genome-aligned eventalign output (via the new --kmer_source model_kmer flag) and RNA004 data (now the default xpore-diffmod prior). For genome-aligned data, use f5c v1.7 or later to generate the eventalign file — it is the version tested for enabling genome-aligned RNA with xPore v2.2.
Get started
$ pip install xpore- Maintenance
- Active
- Last commit 2 months ago
- Stars
- 173
- On GitHub
- Licence
- MIT
- Allows business use
- Downloads for
- None listed
- No release files
- Latest version
- v2.2
- Released 3 months ago
- Built with
- Python
- 100% of the code
Is it looked after?
- Contributors
- Not stated
- Last 90 days
- Issues
- 79% closed
- 32 still open
- Pull requests
- 31 merged
- 1 waiting
- Releases
- 10
- 1 in the last year
- Contributing guide (opens in new tab)
- No security policy
- Code of conduct (opens in new tab)
Similar repos
| Repo | Stars | Last commit | Licence | Downloads for |
|---|---|---|---|---|
| scverse / anndata | 785 | today | BSD-3-Clause | No downloads |
More: languages, topics, project record and preview image
Languages
- Python 100%
Topics
- genomics
- machine-learning
- modification
- nanopore
- nanopore-sequencing
- python
- rna
- rna-modifications
- rna-seq
- transcriptomics
Project record
- JobOther AI tools
- StatusListed
- Commits384
- Forks24
- Watching9
- Stars in 28 days+2
- CreatedJan 6, 2020
- First seen by usNov 7, 2026
- CheckedNov 8, 2026