NygenAnalytics / CyteType
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
Why this job: says: multi agent; topics: llm-agent, agentic-ai
What it does
- Annotations. Cell type, subtype, and activation state for every cluster
- Cell Ontology mapping. Standardized CL IDs for comparison across studies
- Confidence and quality control. Reviewer confidence (High, Moderate, Low) and heterogeneity flags, plus match scores against your existing labels
- Supporting evidence. Supporting, missing and unexpected marker genes, pathways, and the reasoning behind each call
Get started
pip install cytetype- Maintenance
- Active
- Last commit 11 days ago
- Stars
- 139
- On GitHub
- Licence
- BSD-3-Clause
- Allows business use
- Downloads for
- None listed
- No release files
- Latest version
- 0.21.0
- Released 22 days ago
- Built with
- Python
- 99% of the code
Is it looked after?
- Contributors
- 2
- Last 90 days
- Issues
- 87% closed
- 4 still open
- Pull requests
- 51 merged
- 0 waiting
- Releases
- 47
- 18 in the last year
- No contributing guide
- No security policy
- No code of conduct
Similar repos
| Repo | Stars | Last commit | Licence | Downloads for |
|---|---|---|---|---|
| ElliotXie / CASSIA | 109 | 6 days ago | MIT | No downloads |
More: languages, topics and project record
Languages
- Python 99%
- HTML 1%
Topics
- agentic-ai
- anndata
- cell-state-prediction
- celltype-annotation
- celltype-identification
- disease-prediction
- llm
- llm-agent
- marker-genes
- rna-seq
- scanpy
- single-cell
Project record
- JobAgent frameworks
- StatusListed
- Commits107
- Forks15
- Watching6
- Stars in 28 days+1
- CreatedApr 27, 2025
- First seen by usNov 7, 2026
- CheckedNov 7, 2026